Federated learning (FL) is a machine learning technique where clients exchange only local model updates with a central server that combines them to create a global model after local training. While FL offers privacy benefits through local training, privacy-preserving strategies are needed since model updates can leak training data information due to various attacks. To enhance privacy and attack robustness, techniques like homomorphic encryption (HE), Secure Multi-Party Computation (SMPC), and the Private Aggregation of Teacher Ensembles (PATE) can be combined with FL. Currently, no study has combined more than two privacy-preserving techniques with FL or comparatively analyzed their combinations. We conducted a comparative study of privacy-preserving techniques in FL, analyzing performance and security. We implemented FL using an artificial neural network (ANN) with a Malware Dataset from Kaggle for malware detection. To enhance privacy, we proposed models combining FL with the PATE, SMPC, and HE. All models were evaluated against poisoning attacks (targeted and untargeted), a backdoor attack, a model inversion attack, and a man in the middle attack. The combined models maintained performance while improving attack robustness. FL_SMPC, FL_CKKS, and FL_CKKS_SMPC improved both their performance and attack resistance. All the combined models outperformed the base FL model against the evaluated attacks. FL_PATE_CKKS_SMPC achieved the lowest backdoor attack success rate (0.0920). FL_CKKS_SMPC best resisted untargeted poisoning attacks (0.0010 success rate). FL_CKKS and FL_CKKS_SMPC best defended against targeted poisoning attacks (0.0020 success rate). FL_PATE_SMPC best resisted model inversion attacks (19.267 MSE). FL_PATE_CKKS_SMPC best defended against man in the middle attacks with the lowest degradation in accuracy (1.68%), precision (1.94%), recall (1.68%), and the F1-score (1.64%).