Genomic Characterization of an Extensively Drug-Resistant Extra-Intestinal Pathogenic (ExPEC) Escherichia coli Clinical Isolate Co-Producing Two Carbapenemases and a 16S rRNA Methylase

Faculty Veterinary Medicine Year: 2022
Type of Publication: ZU Hosted Pages:
Authors:
Journal: Antibiotics MDPI Volume:
Keywords : Genomic Characterization , , Extensively Drug-Resistant Extra-Intestinal Pathogenic    
Abstract:
An extensively drug-resistant Escherichia coli clinical isolate (N1606) belonging to Sequence Type 361 was recovered from the urine of a patient hospitalized in Switzerland. The strain showed resistance to virtually all _-lactams including the latest generation antibiotics cefiderocol and aztreonam–avibactam. Whole genome sequencing revealed that it possessed two carbapenemase encoding genes, namely blaNDM-5 and blaKPC-3, and a series of additional _-lactamase genes, including blaCTX-M-15 and blaSHV-11 encoding extended-spectrum _-lactamases (ESBLs), blaCMY-145 encoding an AmpC-type cephalosporinase, and blaOXA-1 encoding a narrow-spectrum class D ß-lactamase. Most of these resistance genes were located on plasmids (IncFII-FIA, IncX3, IncI, IncFII). That strain exhibited also a four amino-acid insertion in its penicillin-binding protein 3 (PBP3) sequence, namely corresponding to YRIN. Complete genome analysis revealed that this E. coli isolate carried virulence factors (sitA, gad, hra, terC, traT, and cia) and many other non-_-lactam resistance determinants including rmtB, tet(A), dfrA17 (two copies), aadA1, aadA5 (two copies), sul1 (two copies), qacE (two copies), qepA, mdf(A), catA1, erm(B), mph(A), and qnrS1, being susceptible only to tigecycline, colistin and fosfomycin. In conclusion, we described here the phenotypic and genome characteristics of an extensively drug-resistant (XDR) E. coli ST361 being recognized as an emerging clone worldwide.
   
     
 
       

Author Related Publications

  • Alaa El Din Mohamed Saad Meselhy, "Screening, isolation and characterization of large bacteriophages for use in biocontrol of a wide-range of pathogenic bacteria.", 2024 More
  • Alaa El Din Mohamed Saad Meselhy, "Zoonotic importance of campylobacteriosis at Sharkia province", 2024 More
  • Alaa El Din Mohamed Saad Meselhy, "In-vitro activity of newly-developed β-lactamase inhibitors avibactam, relebactam and vaborbactam in combination with anti-pseudomonal β-lactam antibiotics against AmpC-overproducing clinical Pseudomonas aeruginosa isolates", Springer Nature, 2024 More
  • Alaa El Din Mohamed Saad Meselhy, "Application of Bacteriophages for Biocontrol of Extensively Drug-Resistant Salmonella Serovars Isolated from Poultry Farms.", Assiut University-Faculty of Veterinary Medicine, 2023 More
  • Alaa El Din Mohamed Saad Meselhy, "Inactivation of Avian Influenza Viruses by Chemical Disinfectants and the Influence of Faecal Matter", Faculty of Veterinary Medicine-Alexandria Univessity, 2023 More

Department Related Publications

  • Mohammed Naser Mohamed Ali, "Survival of Foot and Mouth disease virus strain O, / 2 /72 in Egypt outside the animal body", لايوجد, 1900 More
  • Heba Ahmed Abdallah Abdelmgeed, "A comparative evaluation of PCR- based methods for species- specific determination of African animal trypanosomes in Ugandan cattle", BioMed Central Ltd., 2013 More
  • Maysa Abdelbadea Ibrahiem Awaadallah , "تأثير بعض المطهرات الكيميائية شائعة الاستخدام و الأشعة فوق البنفسجية على خمسة من الملوثات الفطرية ذات الاهمية البيطرية والصحية واسعة الانتشار فى مساكن الماشية", Fac. of Veterinary Med. Zagazig University, Egypt, 2010 More
  • Mohammed Alsayed MohamedMohamed , "Further studies on the role of cray fish (Procambarus clarkia) in transmission of some zoonotic parasites in East Delta دراسات متقدمة عن دور كابوريا المياه العذبة فى نقل بعض الطفيليات المشتركة بشرق الدلتا", كلية الطب البيطرى - جامعة الزقازيق, 2003 More
  • Mohammed Alsayed MohamedMohamed , "Effect of Interferon-α on bovine Rota virus. تأثير انترفيرون الفا على فيروس روتا", كلية الطب البيطرى - جامعة بنها, 2010 More
Tweet