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Efficient direct purfication method for high- quality DNA from Soil
Faculty
Technology and Development
Year:
2003
Type of Publication:
ZU Hosted
Pages:
Authors:
AbdulGhani AbdulHakeem AbdulGhani
Staff Zu Site
Abstract In Staff Site
Journal:
arab journal of biotechnology Academic journal
Volume:
Keywords :
Efficient direct purfication method , high- quality
Abstract:
Successful detection and characterization of microbacterial DNA in the environment require efficient extraction of the DNA from environmental samples and adequate purification from the coextracted contaminants that inhibit PCR. Previously reported methods for direct isolation and purification of DNA from microorganisms in soil have multiple steps, laboratory equipment’s and labour-intensive, and result in loss of extracted material. This has promoted the initiative to develop an efficient, nonselective method for direct DNA extraction from the environment that is required for rapid and thorough analysis of introduced microorganisms in environmental samples and for diversity analysis of microbial community in soil. The newly developed method is based on the combination of hot-detergent treatment and commercial spin columns. Fidelity and effectiveness of the procedure were investigated by identifying several phylogenetic groups representing different components of the soil microbial community. In addition, the use of HotStar Taq DNA polymerase has provided the opportunity for simultaneous detection of a variety of microorganisms in a single tube, using multiplex PCR. The ability to simultaneously extract and amplify DNA from many types of microorganisms using a simple extraction and purification step is desirable for many applications in molecular microbial ecology.
Author Related Publications
AbdulGhani AbdulHakeem AbdulGhani, "Medium Chain Acyl-CoA Dehydrogenase Genetic Defects: Identification and partial Characterization of Two New patient Mutants", Universität Konstanz, 1999
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AbdulGhani AbdulHakeem AbdulGhani, "EVALUATION OF CHITOSAN AS A NEW NATURAL PRESERVATIVE IN ORANGE JUICE", Egyptian Knowledge Bank, 2021
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AbdulGhani AbdulHakeem AbdulGhani, "Fully deacetylated chitosan from shrimp and crab using minimum heat input", Egyptian Knowledge Bank, 2023
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AbdulGhani AbdulHakeem AbdulGhani, "Isolation, characterization and phylogenetic analysis of Bagy-2 retrotransposon envelope-domain in the Egyptian cotton G. barbadense", Arab J. Biotech, Vol. 8, No. (1) Jan. (2005): 115-126., 2005
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AbdulGhani AbdulHakeem AbdulGhani, "LTR-retrotransposons-based molecular markers in cultivated Egyptian cottons G. barbadense L.", Afr. J. Biotechnol, 2006
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Department Related Publications
Nabil Abdullah Ahmed Ibrahim Omar, "Biological aspects and life table parameters on two phytoseiid mites fed on Petrobia tritici Kandeel, El-Naggar and Mohamed (Acari: Phytoseiidae, Tetranychidae) الظواهر البيولوجية وجدول الحياة لنوعين من الحلم الفيتوسيدى المتغذى على بتروب", كلية التكنولوجيا والتنمية, 2013
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Nabil Abdullah Ahmed Ibrahim Omar, "Revision of the Genus Pediculaster Vitzthum, 1927 (Acari Pygmephoridae) of Egypt with the description of a new species.", كلية التكنولوجيا والتنمية, 2014
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Nabil Abdullah Ahmed Ibrahim Omar, "Chemical constituents and biocidal activity of the essential oil of Mentha spicata L. grown in zagazig region, Egypt. المكونات الكيماوية ونشاط المبيد الحيوي لزيت النعناع النامي في مدينه الزقازيق -مصر", INSInet Publication., 2009
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