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Genome-Wide Analysis and Expression Profiling of SlHsp70 Gene Family in Solanum lycopersicum Revealed Higher Expression of SlHsp70-11 in Roots under Cd 2+ Stress
Faculty
Agriculture
Year:
2022
Type of Publication:
ZU Hosted
Pages:
Authors:
Ahmed Hosieny Abdou Mhamd
Staff Zu Site
Abstract In Staff Site
Journal:
frontiers in bioscience-landmark IMR press
Volume:
Keywords :
Genome-Wide Analysis , Expression Profiling , SlHsp70 Gene
Abstract:
Background: Tomato is an important part of daily food, rich source of multitude nutrients, suitable candidate for bio-pharmaceutical production due to berry size and has numerous health benefits. Transcriptional regulation of metalloregulatory heat shock protein-70 family plays pivotal role in plants tolerance against abiotic stress factors including salinity, heat, cold, drought and trace metal elements such as cadmium (Cd2+). Methods: Here, we provide comprehensive report on in-silico identification of SlHsp70 family genes in tomato (Solanum lycopersicum) and their expression in tomato via qPCR analysis under broad range of trace metal elements. Results: In-silico analysis revealed 23 SlHsp70 family genes in tomato, phylogenetically divided into four groups I–IV and displayed expression in all tissues. Gene Ontology (GO) analysis revealed that SlHSP70 proteins were membrane localized which were involved in metal ions translocation and oxidoreductase activity to counter hyper-accumlation of reactive oxygen species (ROS). Conclusions: Cd2+ is a widespread heavy metal soil contaminent which is continously polluting fertile soils, a knotty issue which has serious implications over photosynthesis, nitrogen assimilation, minerals and water absorption by plants. Plants exposure to Cd2+ and subsequent qRT-PCR analysis revealed increased expression of SlHsp70-11 in tomato roots, which can be employed in breeding low Cd2+ enriched tomato varieties.
Author Related Publications
Ahmed Hosieny Abdou Mhamd, "Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Medicago truncatula Under a Broad Range of Heavy Metal Stress", Frontiers, 2021
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Ahmed Hosieny Abdou Mhamd, "Nile Tilapia as bio indicator to estimate the contamination of water using SDS-PAGE and RAPA-PCR techniques", faculty of Agr. Ain Shams University, 2012
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Ahmed Hosieny Abdou Mhamd, "Estimation of heat shock protein 70 (Hsp70) gene expression in Nile tilapia (Oreochromis niloticus) using Quantitative Real-time PCR", Zagazig Journal of Agriculture Research, 2017
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Ahmed Hosieny Abdou Mhamd, "Comprehensive genome wide identification and expression analysis of MTP gene family in tomato (Solanum lycopersicum) under multiple heavy metal stress", ُELSEVIR, 2021
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Ahmed Hosieny Abdou Mhamd, "Primary plant nutrients modulate the reactive oxygen species metabolism and mitigate the impact of cold stress in overseeded perennial ryegrass", frontiers, 2023
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Department Related Publications
Ahmed Salaheldeen Mohamed Abdelrahman Eldomyaty, "IDENTIFICATION OF MOLECULAR MARKERS FOR SALT AND DROUGHT TOLERANCE USING BULKED SEGREGANT ANALYSIS (BSA) IN BREAD WHEAT (Triticum aestivum L.)", Zagazig Journal of Agricultural Research, 2014
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Abdallah Abdelaziem Hassanin Safan, "Purification and Modes of Antifungal Actionby Vicia faba cv. Egypt Trypsin Inhibitor", School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, Hong Kong, China., 2010
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Abdallah Abdelaziem Hassanin Safan, "Isolation of a New Trypsin Inhibitor from the Faba Bean (Vicia faba cv.Giza 843) with Potential Medicinal Applications", School of Biomedical Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Shatin, Hong Kong, China., 2011
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Abdallah Abdelaziem Hassanin Safan, "Assessment of the R2R3 MYB gene expression profile during tomato fruit development using in silico analysis, quantitative and semi-quantitative RT-PCR", Elsevier, 2022
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Abdallah Abdelaziem Hassanin Safan, "Genetic and Morphological Diversity Assessment of Five Kalanchoe Genotypes by SCoT, ISSR and RAPD-PCR Markers", MDPI, 2022
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