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Genome-Wide Analysis and Expression Profiling of SlHsp70 Gene Family in Solanum lycopersicum Revealed Higher Expression of SlHsp70-11 in Roots under Cd 2+ Stress
Faculty
Agriculture
Year:
2022
Type of Publication:
ZU Hosted
Pages:
Authors:
Salma Abdalibdaa El Sayed Saud
Staff Zu Site
Abstract In Staff Site
Journal:
frontiers in bioscience-landmark IMR press
Volume:
Keywords :
Genome-Wide Analysis , Expression Profiling , SlHsp70 Gene
Abstract:
Background: Tomato is an important part of daily food, rich source of multitude nutrients, suitable candidate for bio-pharmaceutical production due to berry size and has numerous health benefits. Transcriptional regulation of metalloregulatory heat shock protein-70 family plays pivotal role in plants tolerance against abiotic stress factors including salinity, heat, cold, drought and trace metal elements such as cadmium (Cd2+). Methods: Here, we provide comprehensive report on in-silico identification of SlHsp70 family genes in tomato (Solanum lycopersicum) and their expression in tomato via qPCR analysis under broad range of trace metal elements. Results: In-silico analysis revealed 23 SlHsp70 family genes in tomato, phylogenetically divided into four groups I–IV and displayed expression in all tissues. Gene Ontology (GO) analysis revealed that SlHSP70 proteins were membrane localized which were involved in metal ions translocation and oxidoreductase activity to counter hyper-accumlation of reactive oxygen species (ROS). Conclusions: Cd2+ is a widespread heavy metal soil contaminent which is continously polluting fertile soils, a knotty issue which has serious implications over photosynthesis, nitrogen assimilation, minerals and water absorption by plants. Plants exposure to Cd2+ and subsequent qRT-PCR analysis revealed increased expression of SlHsp70-11 in tomato roots, which can be employed in breeding low Cd2+ enriched tomato varieties.
Author Related Publications
Salma Abdalibdaa El Sayed Saud, "STUDIES ON GENETIC POLYMORPHISM IN EGYPTIAN LUFFA USING RAPD -PCR", مجلة الزقازيق للبحوث الزراعية, 2017
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Salma Abdalibdaa El Sayed Saud, "Evolution analysis of FRIZZY PANICLE ( FZP ) orthologs explored the mutations in DNA coding sequences in the grass family (Poaceae)", PeerJ, 2022
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Salma Abdalibdaa El Sayed Saud, "Genotoxicity and Trace Elements Contents Analysis in Nile Tilapia (Oreochromis niloticus) Indicated the Levels of Aquatic Contamination at Three Egyptian Areas", Frontiers, 2022
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Salma Abdalibdaa El Sayed Saud, "Natural resistance of tomato plants to Tomato yellow leaf curl virus", Frontiers, 2022
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Salma Abdalibdaa El Sayed Saud, "Analysis of metal tolerance protein (MTP) family in sunflower (Helianthus annus L.) and role of HaMTP10 as Cadmium antiporter under moringa seed extract", Elsevier, 2023
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Department Related Publications
Mohamed Abobakr Hassan Yossef, "THE USE OF GAMMA RAYS FOR INDUCTION OF USEFUL MUTATIONS AND MICROPROPAGATION OF MARJORAM (MAJORANA HORTENSIS MOENCH)", Fac. Agric., Zagazig University., 2010
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Ahmed Mansour Mohamed Mansour Elzohery, "H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa", Cold Spring Harbor Laboratory Press, 2016
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Mohamed Abobakr Hassan Yossef, "MOLECULAR GENETIC ANALYSIS FOR WILD POPULATIONS DIVERSITY OF GIANT FRESHWATER PRAWN (MACROBRACHIUM ROSENBERGII) IN SOUTH-EAST ASIA USING MICROSATELLIT MARKERS (SSR)", Fac. Agric., Zagazig University., 2011
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Mohamed Abobakr Hassan Yossef, "EARLINESS AND SPINELESS PROMISING MUTANTS IN SAFFLOWER (Carthamus tinctorius L.)", Fac. Agric., Zagazig University., 2012
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Mohamed Abobakr Hassan Yossef, "Phytochemical and Molecular Analysis of Some Medicinal Plants of Labiatae family growing at different altitudes on Saint Katherine Mountain, South Sinai, Egypt", Fac. Agric., Ean Shams University., 2015
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