Genome-Wide Analysis and Expression Profiling of SlHsp70 Gene Family in Solanum lycopersicum Revealed Higher Expression of SlHsp70-11 in Roots under Cd 2+ Stress

Faculty Agriculture Year: 2022
Type of Publication: ZU Hosted Pages:
Authors:
Journal: frontiers in bioscience-landmark IMR press Volume:
Keywords : Genome-Wide Analysis , Expression Profiling , SlHsp70 Gene    
Abstract:
Background: Tomato is an important part of daily food, rich source of multitude nutrients, suitable candidate for bio-pharmaceutical production due to berry size and has numerous health benefits. Transcriptional regulation of metalloregulatory heat shock protein-70 family plays pivotal role in plants tolerance against abiotic stress factors including salinity, heat, cold, drought and trace metal elements such as cadmium (Cd2+). Methods: Here, we provide comprehensive report on in-silico identification of SlHsp70 family genes in tomato (Solanum lycopersicum) and their expression in tomato via qPCR analysis under broad range of trace metal elements. Results: In-silico analysis revealed 23 SlHsp70 family genes in tomato, phylogenetically divided into four groups I–IV and displayed expression in all tissues. Gene Ontology (GO) analysis revealed that SlHSP70 proteins were membrane localized which were involved in metal ions translocation and oxidoreductase activity to counter hyper-accumlation of reactive oxygen species (ROS). Conclusions: Cd2+ is a widespread heavy metal soil contaminent which is continously polluting fertile soils, a knotty issue which has serious implications over photosynthesis, nitrogen assimilation, minerals and water absorption by plants. Plants exposure to Cd2+ and subsequent qRT-PCR analysis revealed increased expression of SlHsp70-11 in tomato roots, which can be employed in breeding low Cd2+ enriched tomato varieties.
   
     
 
       

Author Related Publications

  • Ahmed Hosieny Abdou Mhamd, "Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Medicago truncatula Under a Broad Range of Heavy Metal Stress", Frontiers, 2021 More
  • Ahmed Hosieny Abdou Mhamd, "Nile Tilapia as bio indicator to estimate the contamination of water using SDS-PAGE and RAPA-PCR techniques", faculty of Agr. Ain Shams University, 2012 More
  • Ahmed Hosieny Abdou Mhamd, "Estimation of heat shock protein 70 (Hsp70) gene expression in Nile tilapia (Oreochromis niloticus) using Quantitative Real-time PCR", Zagazig Journal of Agriculture Research, 2017 More
  • Ahmed Hosieny Abdou Mhamd, "Comprehensive genome wide identification and expression analysis of MTP gene family in tomato (Solanum lycopersicum) under multiple heavy metal stress", ُELSEVIR, 2021 More
  • Ahmed Hosieny Abdou Mhamd, "Primary plant nutrients modulate the reactive oxygen species metabolism and mitigate the impact of cold stress in overseeded perennial ryegrass", frontiers, 2023 More

Department Related Publications

  • Amira Mohamed Abdallah Elwan Rabeaa, "AN ECONOMIC STUDY FOR THE IMPACT OF SOURCES OF FINANACE ON NET FARM INCOME FOR SMALL FARMERS IN SHARKIA GOVERNORATE", zagazig joural of agricultural economics an rural sociolog, 2015 More
  • Salma Abdalibdaa El Sayed Saud, "STUDIES ON GENETIC POLYMORPHISM IN EGYPTIAN LUFFA USING RAPD -PCR", مجلة الزقازيق للبحوث الزراعية, 2017 More
  • Salma Abdalibdaa El Sayed Saud, "Evolution analysis of FRIZZY PANICLE ( FZP ) orthologs explored the mutations in DNA coding sequences in the grass family (Poaceae)", PeerJ, 2022 More
  • Salma Abdalibdaa El Sayed Saud, "Genotoxicity and Trace Elements Contents Analysis in Nile Tilapia (Oreochromis niloticus) Indicated the Levels of Aquatic Contamination at Three Egyptian Areas", Frontiers, 2022 More
  • Salma Abdalibdaa El Sayed Saud, "Natural resistance of tomato plants to Tomato yellow leaf curl virus", Frontiers, 2022 More
Tweet