Evolution analysis of FRIZZY PANICLE ( FZP ) orthologs explored the mutations in DNA coding sequences in the grass family (Poaceae)

Faculty Agriculture Year: 2022
Type of Publication: ZU Hosted Pages:
Authors:
Journal: PeerJ PeerJ Volume:
Keywords : Evolution analysis , FRIZZY PANICLE , , , orthologs explored    
Abstract:
FRIZZY PANICLE (FZP), an essential gene that controls spikelet differentiation and development in the grass family (Poaceae), prevents the formation of axillary bud meristems and is closely associated with crop yields. It is unclear whether the FZP gene or its orthologs were selected during the evolutionary process of grass species, which possess diverse spike morphologies. In the present study, we adopted bioinformatics methods for the evolutionary analysis of FZP orthologs in species of the grass family. Thirty-five orthologs with protein sequences identical to that of the FZP gene were identified from 29 grass species. Analysis of conserved domains revealed that the AP2/ERF domains were highly conserved with almost no amino acid mutations. However, species of the tribe Triticeae, genus Oryza, and C4 plants exhibited more significant amino acid mutations in the acidic C-terminus region. Results of the phylogenetic analysis showed that the 29 grass species could be classified into three groups, namely, Triticeae, Oryza, and C4 plants. Within the Triticeae group, the FZP genes originating from the same genome were classified into the same sub-group. When selection pressure analysis was performed, significant positive selection sites were detected in species of the Triticeae and Oryza groups. Our results show that the FZP gene was selected during the grass family’s evolutionary process, and functional divergence may have already occurred among the various species. Therefore, researchers investigating the FZP gene’s functions should take note of the possible presence of various roles in other grass species
   
     
 
       

Author Related Publications

  • Ahmed Hosieny Abdou Mhamd, "Genome-Wide Identification and Expression Analysis of Metal Tolerance Protein Gene Family in Medicago truncatula Under a Broad Range of Heavy Metal Stress", Frontiers, 2021 More
  • Ahmed Hosieny Abdou Mhamd, "Nile Tilapia as bio indicator to estimate the contamination of water using SDS-PAGE and RAPA-PCR techniques", faculty of Agr. Ain Shams University, 2012 More
  • Ahmed Hosieny Abdou Mhamd, "Estimation of heat shock protein 70 (Hsp70) gene expression in Nile tilapia (Oreochromis niloticus) using Quantitative Real-time PCR", Zagazig Journal of Agriculture Research, 2017 More
  • Ahmed Hosieny Abdou Mhamd, "Comprehensive genome wide identification and expression analysis of MTP gene family in tomato (Solanum lycopersicum) under multiple heavy metal stress", ُELSEVIR, 2021 More
  • Ahmed Hosieny Abdou Mhamd, "Primary plant nutrients modulate the reactive oxygen species metabolism and mitigate the impact of cold stress in overseeded perennial ryegrass", frontiers, 2023 More

Department Related Publications

  • Ahmed Mansour Mohamed Mansour Elzohery, "Genomic Mobile Elements: Activation, Evolution and Molecular markers", VDM Verlag, 2009 More
  • Ahmed Salaheldeen Mohamed Abdelrahman Eldomyaty, "Assessment of Eight Faba Bean (Vicia faba L.) Cultivars for Drought Stress Tolerance through Molecular, Morphological, and Physiochemical Parameters", Sustainability, 2023 More
  • Ahmed Salaheldeen Mohamed Abdelrahman Eldomyaty, "Assessment of the R2R3 MYB gene expression profile during tomato fruit development using in silico analysis, quantitative and semi-quantitative RT-PCR", Saudi Journal of Biological Sciences, 2022 More
  • Salma Abdalibdaa El Sayed Saud, "Genotoxicity and Trace Elements Contents Analysis in Nile Tilapia (Oreochromis niloticus) Indicated the Levels of Aquatic Contamination at Three Egyptian Areas", Frontiers, 2022 More
  • Mohamed Abdel Salam AbdulHameed, "Genotoxicity and Trace Elements Contents Analysis in Nile Tilapia (Oreochromis niloticus) Indicated the Levels of Aquatic Contamination at Three Egyptian Areas", Frontiers, 2022 More
Tweet