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Genetic characterization of upper respiratory tract virome from nonvaccinated Egyptian cow-calf operations
Faculty
Veterinary Medicine
Year:
2022
Type of Publication:
ZU Hosted
Pages:
1-12
Authors:
Ibrahim Mohamed Alie
Staff Zu Site
Abstract In Staff Site
Journal:
PLOS ONE PLOS
Volume:
Volume 17
Keywords :
Genetic characterization , upper respiratory tract virome
Abstract:
Bovine respiratory disease (BRD) is the costliest complex disease affecting the cattle industry worldwide, with significant economic losses. BRD pathogenesis involves several interactions between microorganisms, such as bacteria and viruses, and management factors. The present study aimed to characterize the nasal virome from 43 pooled nasal swab samples collected from Egyptian nonvaccinated cow-calf operations with acute BRD from January to February 2020 using metagenomic sequencing. Bovine herpesvirus-1 (BHV-1), first detection of bovine herpesvirus-5 (BHV-5), and first detection of bovine parvovirus-3 (BPV-3) were the most commonly identified in Egyptian cattle. Moreover, phylogenetic analysis of glycoprotein B revealed that the BHV-1 isolate is closely related to the Cooper reference strain (genotype 1.1), whereas the BHV-5 isolate is closely related to the reference virus GenBank NP_954920.1. In addition, the whole-genome sequence of BPV-3 showed 93.02% nucleotide identity with the reference virus GenBank AF406967.1. In this study, several DNA viruses, such as BHV-1 and first detection BHV-5, and BPV-3, were detected and may have an association with the BRD in Egyptian cattle. Therefore, further research, including investigating more samples from different locations to determine the prevalence of detected viruses and their contributions to BRD in cattle in Egypt, is needed.
Author Related Publications
Ibrahim Mohamed Alie, "Evaluation of 3 refractometers to determine transfer of passive immunity in neonatal beef calves", Wiley, 2021
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Ibrahim Mohamed Alie, "Migratory Wild Birds as a Potential Disseminator of Antimicrobial-Resistant Bacteria around Al-Asfar Lake, Eastern Saudi Arabia", MDPI, 2021
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Ibrahim Mohamed Alie, "Serological and Molecular Characterization of Mycobacterium avium Subsp. paratuberculosis (MAP) from Sheep, Goats, Cattle and Camels in the Eastern Province, Saudi Arabia", MDPI, 2021
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Ibrahim Mohamed Alie, "Accuracy of direct and indirect methods for assessing bovine colostrum quality using a latent class model fit within a Bayesian framework", Elsevier, 2021
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Ibrahim Mohamed Alie, "Diversity and Risk Factors Associated with Multidrug and Methicillin-Resistant Staphylococci Isolated from Cats Admitted to a Veterinary Clinic in Eastern Province, Saudi Arabia", MDPI, 2021
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Department Related Publications
Ahmed Mohamed Abdelaal Mansur, "Clinical, laboratory and ultrasonographic investigations of left abomasal displacement in Holstein- Friesian cows", cairo, 2014
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Ahmed Mohamed Abdelaal Mansur, "Prognostic Value of Serum Cardiac Troponin T and Nitric Oxide as Cardiac Biomarkers in Pregnancy Toxemic Goats", pakistan, 2013
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Ahmed Mohamed Abdelaal Mansur, "Clinico-biochemical, ultrasonographic and pathological findings of hepatic abscess in feedlot cattle and buffaloes", india, 2014
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Ahmed Mohamed Abdelaal Mansur, "Ultrasonography as diagnostic and prognostic approach for urolithiasis in Egyptian buffalo's calves", Egypt, 2013
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Ahmed Mohamed Abdelaal Mansur, "Selected studies on foreign body impaction in goats with special reference to ultrasonography", india, 2014
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