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Diagnostic performance of rapid antigen test for COVID-19 and the effect of viral load, sampling time, subject’s clinical and laboratory parameters on test accuracy
Faculty
Medicine
Year:
2021
Type of Publication:
ZU Hosted
Pages:
Authors:
Rania Mohamed Mohamed Ebrahiem
Staff Zu Site
Abstract In Staff Site
Journal:
Journal of Infection and Public Health Elsevier
Volume:
Keywords :
Diagnostic performance , rapid antigen test , COVID-19
Abstract:
Diagnostic performance of rapid antigen test for COVID-19 and the effect of viral load, sampling time, subject’s clinical and laboratory parameters on test accuracy Background: Egypt was among the first 10 countries in Africa that experienced COVID-19 cases. The sudden surge in the number of cases is overwhelming the capacity of the national healthcare system, particularly in developing countries. Central to the containment of the ongoing pandemic is the availability of rapid and accurate diagnostic tests that could pinpoint patients at early disease stages. In the current study, we aimed to (1) Evaluate the diagnostic performance of the rapid antigen test (RAT) “Standard ™ Q COVID-19 Ag” against reverse transcriptase quantitative real-time PCR (RT-qPCR) in eighty-three swabs collected from COVID-19 suspected individuals showing various demographic features, clinical and radiological findings. (2) Test whether measuring laboratory parameters in participant’s blood would enhance the predictive accuracy of RAT. (3) Identify the most important features that determine the results of both RAT and RT-qPCR. Methods: Diagnostic measurements (e.g. sensitivity, specificity, etc.) and receiver operating characteristic curve was used to assess the clinical performance of “Standard ™ Q COVID-19 Ag”. We used the support vector machine (SVM) model to investigate whether measuring laboratory indices would enhance the accuracy of RAT. Moreover, a random forest classification model was used to determine the most important determinants of the results of RAT and RT-qPCR for COVID-19 diagnosis. Results: The sensitivity, specificity, and accuracy of RAT were 78.2, 64.2, and 75.9%, respectively. Samples with high viral load and those that were collected within one-week postsymptoms showed the highest sensitivity and accuracy. The SVM modeling showed that measuring laboratory indices did not enhance the predictive accuracy of RAT. Conclusion: “Standard ™ Q COVID-19 Ag” should not be used alone for COVID-19 diagnosis due to its low diagnostic performance relative to the RT-qPCR. RAT is best used at the early disease stage and in patients with high viral load.
Author Related Publications
Rania Mohamed Mohamed Ebrahiem, "Prevalence and antimicrobial resistance patterns of nosocomial pathogens causing surgical site infections in an Egyptian university hospital", Medical Microbiology & Immunology Department, Faculty of Medicine, Zagazig University, 2020
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Rania Mohamed Mohamed Ebrahiem, "Ceftazidime/avibactam efficiency tested in vitro against carbapenem-resistant Klebsiella pneumoniae isolated from neonates with sepsis", Medical Microbiology & Immunology department, Faculty of Medicine, Zagazig University, 2021
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Rania Mohamed Mohamed Ebrahiem, "Central line AssociatedBloodStream Infection:A prospective study in intensive care of Tertiary care children's university hospita", ُُEgyptian Society of Pediatrics, 2019
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Rania Mohamed Mohamed Ebrahiem, "The Effect of Adrenergic β2 Receptor Thr164Ile Gene Polymorphism on Asthma Risk, Severity and Response to Β2 Agonists in Egyptian Children", ُُEgyptian Society of Microbiology & Immunology, 2020
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Rania Mohamed Mohamed Ebrahiem, "Sublingual Versus Subcutaneous Immunotherapy as regards Efficacy and Safety in Respiratory Allergic Patients", ُُEgyptian Society of Immunology, 2019
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Department Related Publications
Noha Mohamed El Sayed Hammad, "The incidence of Mycoplasma pneumoniae in community acquired pneumonia among children: one centre study", Microbes and Infectious diseases, 2020
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Noha Mohamed El Sayed Hammad, "Complement component 3c and tumor necrosis factor-α systemic assessment after Candida antigen immunotherapy in cutaneous", Brazilian Journal of Microbiology, 2020
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